public abstract class CricksNNMethod extends PatternComputation
collector, fileName
Constructor and Description |
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CricksNNMethod() |
Modifier and Type | Method and Description |
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ThermoResult |
computesHybridizationInitiation(Environment environment)
computes the enthalpy and entropy for the duplex initiation with the Environment 'environment'.
|
ThermoResult |
computeThermodynamics(NucleotidSequences sequences,
int pos1,
int pos2,
ThermoResult result) |
boolean |
isMissingParameters(NucleotidSequences sequences,
int pos1,
int pos2)
Check if one thermodynamic parameter is missing to compute the enthalpy and entropy of the pattern
at the positions pos1 and pos2.
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getCollector, getData, getDataFileName, initialiseFileName, isApplicable, loadData, loadFile
public ThermoResult computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)
computeThermodynamics
in interface PatternComputationMethod
computeThermodynamics
in class PatternComputation
sequences
- which contains the sequences entered by the user.result
- which contains the computed enthalpy, entropy and melting temperature.public boolean isMissingParameters(NucleotidSequences sequences, int pos1, int pos2)
PatternComputationMethod
isMissingParameters
in interface PatternComputationMethod
isMissingParameters
in class PatternComputation
sequences
- which contains the sequences entered by the user.public ThermoResult computesHybridizationInitiation(Environment environment)
environment
-